Re: [Freesurfer] doubt regarding wm.mgz non wm voxels

2014-12-18 Thread Bruce Fischl
Hi Elisa try the -seg-wlo I sent you before. Bruce On Thu, 18 Dec 2014, elisa veronese wrote: > Just one additional issue: what am I supposed to do if (please see attached > pictures) the wm.mgz file correctly does not include gray matter voxels, but > the yellow surface goes into the gray matte

Re: [Freesurfer] doubt regarding wm.mgz non wm voxels

2014-12-18 Thread elisa veronese
Just one additional issue: what am I supposed to do if (please see attached pictures) the wm.mgz file correctly does not include gray matter voxels, but the yellow surface goes into the gray matter? How can I fix this error? Thank you. Best, elisa [image: Immagine in linea 1] [image: Immagine

Re: [Freesurfer] doubt regarding wm.mgz non wm voxels

2014-12-18 Thread elisa veronese
Thank you. Best, elisa Il 18/dic/2014 16:10 "Bruce Fischl" ha scritto: > Hi Elisa > > if the surfaces are correct (and they seem to have done an impressively > good job) then you don't need to. While it worked for this case, I would > be a bit concerned that the surfaces won't recover from wm.m

Re: [Freesurfer] doubt regarding wm.mgz non wm voxels

2014-12-18 Thread Bruce Fischl
Hi Elisa if the surfaces are correct (and they seem to have done an impressively good job) then you don't need to. While it worked for this case, I would be a bit concerned that the surfaces won't recover from wm.mgz inaccuracies in others ones though. You might try setting wlo to above the val