Re: [Freesurfer] dmri_motion -T threshold

2017-07-19 Thread Yendiki, Anastasia
reesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Wednesday, July 19, 2017 at 9:48 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] dmri_motion -T threshold We want to match on dropout as well which would require us to cha

Re: [Freesurfer] dmri_motion -T threshold

2017-07-19 Thread Buckless, Colleen
Sent: Wednesday, July 19, 2017 9:31 AM To: Freesurfer support list Subject: Re: [Freesurfer] dmri_motion -T threshold If neither of your groups has bad slices (which you should confirm by looking at the images), then they are matched in that respect. You can then check for differences in the

Re: [Freesurfer] dmri_motion -T threshold

2017-07-19 Thread Yendiki, Anastasia
u>> Subject: Re: [Freesurfer] dmri_motion -T threshold Hi Anastasia, We are trying to match our groups on motion and can’t match them if our scans have the floor values. We are not sure how to determine what the threshold value should be in order to make the dropout score no longer floor out.

Re: [Freesurfer] dmri_motion -T threshold

2017-07-19 Thread Buckless, Colleen
hanks, Colleen From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Yendiki, Anastasia Sent: Tuesday, July 18, 2017 6:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] dmri_motion -T threshold Hi Colleen - Do the DWIs of your subjects

Re: [Freesurfer] dmri_motion -T threshold

2017-07-18 Thread Yendiki, Anastasia
Hi Colleen - Do the DWIs of your subjects have any slices that are in the brain but look very dark, almost like the background? That's what those measures capture, and not all subjects have that. If your subjects don't have that, then there's nothing to be concerned about! Best, a.y _