Re: [Freesurfer] dicom help

2010-09-02 Thread Bruce Fischl
where did they come from? Did you try telling mri_conver that they are dicom with -it dicom? On Thu, 2 Sep 2010, Gabriel Go.Es. wrote: > > > > Hello FreeSurfers > > I'm trying to convert some dicom images, but some of them apparentely FS just > does not recognize them as dicom images, even when

Re: [Freesurfer] dicom help

2010-09-02 Thread Michael Harms
'dcm2nii' would be another DICOM to nifti converter to try. good luck, -MH On Thu, 2010-09-02 at 17:54 -0400, Douglas N Greve wrote: > Sorry, I don't have an easy solution. I think philips does something > that breaks our 3rd party dicom reader, so there's not an easy way for > me to fix it. T

Re: [Freesurfer] dicom help

2010-09-02 Thread Douglas N Greve
Sorry, I don't have an easy solution. I think philips does something that breaks our 3rd party dicom reader, so there's not an easy way for me to fix it. There are other converters out there (one called MRIconvert). You can convert to nifti and just pass that to recon-all instead of the dicom.

Re: [Freesurfer] dicom help

2010-09-02 Thread Gabriel Go.Es.
Mmm, now I just have a problem... that dicom is from an structural MRI and still does not work... do you think that can i solve it anyother way??? Gabriel ___ Freesurfer mailing list Freesurfer@nmr.mgh.harva

Re: [Freesurfer] dicom help

2010-09-02 Thread Douglas N Greve
t; > > > > Date: Thu, 2 Sep 2010 16:22:19 -0400 > > From: gr...@nmr.mgh.harvard.edu > > To: gabriel...@hotmail.com > > CC: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] dicom help > > > > This is from a philips scanner, most of the tim

Re: [Freesurfer] dicom help

2010-09-02 Thread Gabriel Go.Es.
nvert some *.dcm images, so I can not figure out what could be wrong. Gabriel > Date: Thu, 2 Sep 2010 16:22:19 -0400 > From: gr...@nmr.mgh.harvard.edu > To: gabriel...@hotmail.com > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] dicom help > > This is from

Re: [Freesurfer] dicom help

2010-09-02 Thread Douglas N Greve
This is from a philips scanner, most of the time I think our tools work on philips data. Does this happen with all of your philips data or just this one series? doug Gabriel Go.Es. wrote: > > > Hello FreeSurfers > > I'm trying to convert some dicom images, but some of them apparentely > FS ju