-all command.
From: Bruce Fischl
Subject: Re: [Freesurfer] defining input images in a for-loop in
recon-all
To: Freesurfer support list
Message-ID:
Content-Type: text/plain; charset="utf-8"
Hi Darko
sorry, you need to sort this out yourself as there is no way for
input images in a for-loop in
> recon-all
> To: Freesurfer support list
> Message-ID:
>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Darko
>
> sorry, you need to sort this out yourself as there is no way for us to
> know where the dicoms are
Hi Darko
sorry, you need to sort this out yourself as there is no way for us to
know where the dicoms are. An alternative is to create each subject dir,
create the 00?.mgz files (if you have more than one acquistion) in the
/mri/orig dir, then run recon-all without the -i flag. If you use
-i
