Re: [Freesurfer] cortical GM from parcellations

2007-03-20 Thread Doug Greve
reason why this would be expected. -Aaron- -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Sent: Monday, March 19, 2007 12:18 PM To: Goldman, Aaron (NIH/NIMH) [C] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical GM from parcellations Hi Aaron, In

RE: [Freesurfer] cortical GM from parcellations

2007-03-20 Thread Bruce Fischl
19, 2007 12:18 PM To: Goldman, Aaron (NIH/NIMH) [C] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical GM from parcellations Hi Aaron, In terms of purely anatomically, to calculate the total GM I would not include the corpus callosum (a white matter structure) or the unknown r

Re: [Freesurfer] cortical GM from parcellations

2007-03-20 Thread Bruce Fischl
Hi Aaron, you can use mris_anatomical_stats -l ?h.cortex where the cortex labl is generated automatically and should be in the subjects label dir. cheers, Bruce On Mon, 19 Mar 2007, Goldman, Aaron (NIH/NIMH) [C] wrote: Hi, I wanted to calculate total surface-based cortical GM, and was wo

RE: [Freesurfer] cortical GM from parcellations

2007-03-19 Thread Goldman, Aaron (NIH/NIMH) [C]
al Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Sent: Monday, March 19, 2007 12:18 PM To: Goldman, Aaron (NIH/NIMH) [C] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical GM from parcellations Hi Aaron, In terms of purely anatomically, to calculate the total GM I

Re: [Freesurfer] cortical GM from parcellations

2007-03-19 Thread rahul
Hi Aaron, In terms of purely anatomically, to calculate the total GM I would not include the corpus callosum (a white matter structure) or the unknown region (which is an amalgam of subcortical areas). Best, rahul Hi, I wanted to calculate total surface-based cortical GM, and was > wondering i