Thank you Douglas for the suggestion, I will try this method!
Alexarae
On Thu, Jul 10, 2014 at 11:43 AM, Douglas N Greve wrote:
>
> If you have matlab, it would be pretty easy to do it there, something like
>
> aseg = MRIread('aseg.mgz');
> seg = MRIread('seg_edited.mgz');
>
> % Your first seg
If you have matlab, it would be pretty easy to do it there, something like
aseg = MRIread('aseg.mgz');
seg = MRIread('seg_edited.mgz');
% Your first seg inside cerebellum
indseg1 = find(seg.vol == 1 & (aseg.vol == 8 | aseg.vol == 47));
% cerebellum cortex = 8 and 47, see $FREESURFER_HOME/FreeSur
