sorry, should be
mergeseg --src aseg.auto.mgz --merge stroke.mgz --o aseg.presurf.mgz
--segid 77
when you re-run recon-all, it will create the manedit file
On 09/07/2017 12:49 PM, miracle ozzoude wrote:
> Thanks doug. If I run the recon-all -autorecon2-noaseg -autorecon3.
> Will it incorporat
Thanks doug. If I run the recon-all -autorecon2-noaseg -autorecon3. Will it
incorporate the stroke? Also, does it matter if it's a cortical stroke and
i am using v6.0 and i don't see aseg.manedit.mgz.
Best,
Paul
On Thu, Sep 7, 2017 at 12:38 PM, Douglas N Greve
wrote:
>
> try something like
>
>
try something like
mergeseg --src aseg.presurf.mgz --merge stroke.mgz --o aseg.manedit.mgz
--segid 77
This will model the strokes as WM hypointensities
On 09/07/2017 11:54 AM, miracle ozzoude wrote:
> Hello FreeSurfer expert,
>
> I have a binarized stroke masks of 200 stroke patients that wer
