Re: [Freesurfer] cespct in FS 5.3

2016-06-08 Thread S.V.Shepherd [work]
The built-in Intensity normalization is a constant multiplied to each run's data based on the per-run mean, right? It thus normalizes global intensity variation across subjects, but not regional, right? Whereas my approach would normalize regional variation in signal strength (good), at the risk

Re: [Freesurfer] cespct in FS 5.3

2016-06-07 Thread Douglas Greve
Rescaling by the voxel mean will mess up the intensity normalization. Try making your analysis (mkanalysis-sess) with -no-inorm and see if the results are more consistent. They will not be exact because the raw mean time course is not used to create the cespct. Rather it is the regression coe