Re: [Freesurfer] bad skull strip - but doesn't affect surfaces

2011-07-01 Thread Bruce Fischl
you should be fine. cheers Bruce On Fri, 1 Jul 2011, Tetiana Dadakova wrote: > Dear list, > > For one of my subjects the skull strip is bad, but it doesn't > (visually) affect neither surfaces nor segmentation (see the image in > the attachment). > In this case, do I have to edit the skull strip?

Re: [Freesurfer] bad skull strip - but doesn't affect surfaces

2011-07-01 Thread Khoa Nguyen
Hi Tanja, If it doesn't affect the surfaces or the aseg then you should be all set. It doesn't look like there's a lot of skull left in your image anyway. But if you have time and want it to look cleaner/prettier - you can try running the skullstrip step again and then rerunning -autorecon2 -au