Re: [Freesurfer] aseg2feat for PPI seeds for FSL

2011-09-28 Thread Douglas N Greve
Michelle Umali wrote: > Dear Doug and the Freesurfers, > Ok, so is there a special filtered_func.nii generated from > reg-feat2anat for each run or can I just use the feat? No, just use the FEAT one. > > When one does a cross-subject PPI in FSL and enter each run from each > person, isn't every

Re: [Freesurfer] aseg2feat for PPI seeds for FSL

2011-09-28 Thread Michelle Umali
Dear Doug and the Freesurfers, Ok, so is there a special filtered_func.nii generated from reg-feat2anat for each run or can I just use the feat? When one does a cross-subject PPI in FSL and enter each run from each person, isn't everyone in a different space? How do you account for this when doin

Re: [Freesurfer] aseg2feat for PPI seeds for FSL

2011-09-28 Thread Douglas N Greve
Michelle Umali wrote: > Hi Freesurfers, > I want to do a PPI in FSL FEAT using the V1 left and righ found > generated in recon-all as seeds using: > > I know for each subject I have to get a timecourse for my seeds > fslmeants -i filtered_func.nii.gz -o my_timecourse.txt -m V1_mask.nii.gz > > For