Re: [Freesurfer] aseg.stats vs. volumes in native T1 space

2014-01-17 Thread Douglas Greve
Try using mri_label2vol instead of mri_convert. mri_convert just does a mapping whereas mri_label2vol knows that this is a segmentation doug On 1/17/14 8:23 AM, Bruce Fischl wrote: > Hi Gabor > > the volumes must change with reslicing. As to why they get consistently > bigger in the hippocampus

Re: [Freesurfer] aseg.stats vs. volumes in native T1 space

2014-01-17 Thread Bruce Fischl
Hi Gabor the volumes must change with reslicing. As to why they get consistently bigger in the hippocampus I'm not sure, probably something to do with its geometry cheers Bruce On Fri, 17 Jan 2014, Gabor Perlaki wrote: > Dear all, > > I've run the freesurfer on 3 subjects and converted the as