Re: [Freesurfer] about issues with "recon-all"

2014-09-11 Thread Z K
ktop/freesurfer/mni" >>>> >>>> 3. setenv SUBJECTS_DIR $FREESURFER_HOME/subjects >>>> *note: I also tried to set SUBJECTS_DIR to the specific folder where >>>> the .dcm files are. >>>> 3.1 setenv SUBJECTS_DIR $FREESURFER_HOME/subjects/D

Re: [Freesurfer] about issues with "recon-all"

2014-09-07 Thread Abel Lei
2014 16:02:05 -0400 (EDT) From: Bruce Fischl Subject: Re: [Freesurfer] about issues with "recon-all" To: Freesurfer support list Message-ID: Content-Type: text/plain; charset="iso-8859-1" after you run the source command can you type: which mri_convert and let us know

Re: [Freesurfer] about issues with "recon-all"

2014-09-07 Thread Bruce Fischl
with this mailing list. > > -Abel (Chia-Ming) > > -- > > Message: 6 > Date: Sat, 6 Sep 2014 16:02:05 -0400 (EDT) > From: Bruce Fischl > Subject: Re: [Freesurfer] about issues with "recon-all" > To: Freesurfer support list > Mes

Re: [Freesurfer] about issues with "recon-all"

2014-09-07 Thread Lei, Chia-Ming
I'm still trying to figure out how to manage/operate with this mailing list. -Abel (Chia-Ming) -- Message: 6 Date: Sat, 6 Sep 2014 16:02:05 -0400 (EDT) From: Bruce Fischl Subject: Re: [Freesurfer] about issues with "

Re: [Freesurfer] about issues with "recon-all"

2014-09-06 Thread Bruce Fischl
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Saturday, September 6, 2014 9:56 AM To: Freesurfer support list Subject: Re: [Freesurfer] about issues with "recon-all" Hi Abel what OS are you running on? Did you source the file $FREESURFER_HOME/FreeSurf

Re: [Freesurfer] about issues with "recon-all"

2014-09-06 Thread Lei, Chia-Ming
or your help! -Abel -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Saturday, September 6, 2014 9:56 AM To: Freesurfer support list Subject: Re: [Freesurfer] about issues with "recon-all" Hi Ab

Re: [Freesurfer] about issues with "recon-all"

2014-09-06 Thread Abel Lei
Of Bruce Fischl Sent: Saturday, September 6, 2014 9:56 AM To: Freesurfer support list Subject: Re: [Freesurfer] about issues with "recon-all" Hi Abel what OS are you running on? Did you source the file $FREESURFER_HOME/FreeSurferEnv.csh ? cheers Bruce On Sat, 6 Sep 2014, Abel

Re: [Freesurfer] about issues with "recon-all"

2014-09-06 Thread Bruce Fischl
Hi Abel what OS are you running on? Did you source the file $FREESURFER_HOME/FreeSurferEnv.csh ? cheers Bruce On Sat, 6 Sep 2014, Abel Lei wrote: Hi FreeSurfers,   I’m a very beginner to both the Linux OS and the FreeSurfer program. After finally setting up the FreeSurfer, I was tryin