Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-14 Thread Fischl, Bruce
Glad to hear it Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of lqcheng2017 Sent: Thursday, April 14, 2022 2:40 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats External Email - Use Caution Hi Bruce, It

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-13 Thread lqcheng2017
22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats   External Email - Use Caution Hi Yulin and Bruce,    Thanks for your quick replies. I tested FS v6.0 and v7.2 with the following command, and

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-13 Thread Fischl, Bruce
To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats External Email - Use Caution Hi Yulin and Bruce, Thanks for your quick replies. I tested FS v6.0 and v7.2 with the following command, and got the same results

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-12 Thread lqcheng2017
External Email - Use Caution Hi Yulin and Bruce,  Thanks for your quick replies. I tested FS v6.0 and v7.2 with the following command, and got the same results. mris_anatomical_stats -thr3 -mgz -f ./lh.aparc.stats -b -a $SUBJECTS_DIR/100307/label/l

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-12 Thread Fischl, Bruce
Hi Luqi You need to send us the complete command line you ran and the entire output of the command, plus the FS version number you are using. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of lqcheng2017 Sent: Tuesday, April 12, 2022 9:09 AM To: freesurfer Subject: [Fre

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-12 Thread Huang, Yujing
Hi Luqi, I’m wondering how you ran mris_anatomical_stats. Can you send the command? I noticed 2 things in the error output: 1. The filename has a ‘-‘ after the ‘.’ 2. lh files should not have ‘mgz’ extension Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of lqchen