Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Douglas N Greve
The 4th column is the gray matter volume ("GrayVol"). doug Ed Gronenschild wrote: > Doug, > > I don't understand this since the ?h.aparc.stats file doesn't > contain volumes. > > Ed > > On 18 Jun, 2010, at 15:56, Douglas N Greve wrote: > > >> Yes, the difference is partial volume correction. B

Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Ed Gronenschild
Doug, I don't understand this since the ?h.aparc.stats file doesn't contain volumes. Ed On 18 Jun, 2010, at 15:56, Douglas N Greve wrote: > Yes, the difference is partial volume correction. But you should > use the > values from the ?h.aparc.stats file for cortical parcellations as it > uses

Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Douglas N Greve
Yes, the difference is partial volume correction. But you should use the values from the ?h.aparc.stats file for cortical parcellations as it uses the more accurate surface-based volumetric calculation. doug Ed Gronenschild wrote: > But what about the labels starting with "lh-ctx-" > and "rh_ct

Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Douglas N Greve
use aseg.stats for the subcortical volumes. There is a difference between aseg.stats and wmparc.stats for the subcortical volumes because of the partial volume correction. Ed Gronenschild wrote: > Hi, > > I tried to find out this from previous contributions > but got lost. > There's some confusi

Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Ed Gronenschild
But what about the labels starting with "lh-ctx-" and "rh_ctx-", like for instance lh-ctx-fusiform (index=1007). In the wmparc.stats file it has a volume of 8249 voxels and in wmparc.mgz 8752 voxels? Is the first pve-corrected and the latter not? On 18 Jun, 2010, at 13:43, Allison Stevens wrote:

Re: [Freesurfer] Which volumes to use

2010-06-18 Thread Allison Stevens
You're right - aseg.stats refers to the aseg.mgz and you should use that. You would only use the wm parcellations from the wmparc.mgz -- On Fri, 18 Jun 2010, Ed Gronenschild wrote: > Hi, > > I tried to find out this from previous contributions > but got lost. > There's some confusion on which