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From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Varjabedian, Ani
Sent: Thursday, October 09, 2014 10:02 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] WM & Pial Segmentation Errors
Hi Michael,
I took a look at your data an
-boun...@nmr.mgh.harvard.edu] On Behalf Of Varjabedian, Ani
Sent: Thursday, October 09, 2014 10:02 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] WM & Pial Segmentation Errors
Hi Michael,
I took a look at your data and it seems that you paired a T2 image with a T1
image when
Hi Michael,
I took a look at your data and it seems that you paired a T2 image with
a T1 image when you submitted to recon all. Recon-all will try to
average these together, and since they have such different contrasts,
you will end up with a poor template for surfaces later on.
Try running rec
Ah, sorry for some reason it just wasn’t clicking before. I was able to
upload a dataset. Thanks!
On 10/8/14, 10:59 AM, "Bruce Fischl" wrote:
>Hi Michael
>
>you need to follow the directions on this page:
>
>http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
>
>in particular, make sure y
Hi Michael
you need to follow the directions on this page:
http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
in particular, make sure you change directories before trying to put
cheers
Bruce
On Wed,
8 Oct 2014,
Smith,
Michael wrote:
See attached
On 10/8/14, 10:46 AM, "Bruce Fisc
See attached
On 10/8/14, 10:46 AM, "Bruce Fischl" wrote:
>can you send us the details of your ftp command?
>On Wed, 8 Oct 2014, Smith,
>Michael wrote:
>
>> Hi Bruce,
>>
>> Do I not have permission to transfer files to the remote machine? I can
>> login fine as an anonymous user but when I attemp
can you send us the details of your ftp command?
On Wed, 8 Oct 2014, Smith,
Michael wrote:
Hi Bruce,
Do I not have permission to transfer files to the remote machine? I can
login fine as an anonymous user but when I attempt to use the put command
it says it could not create the file.
On 10/7
Hi Bruce,
Do I not have permission to transfer files to the remote machine? I can
login fine as an anonymous user but when I attempt to use the put command
it says it could not create the file.
On 10/7/14, 7:33 PM, "Bruce Fischl" wrote:
>Hi Michael
>
>sure, the T2 can help if you have it (altho
Hi Michael
sure, the T2 can help if you have it (although you'll need to download some
updated binaries), but it is impossible to tell from these images what is
going on. Looks either the intensity normalization, mri_segment or
mris_make_surfaces failed. You can try the expert options for each
