Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-05 Thread Antoine Royer
mri_convert -at [warp.m3z] Hope this helps a bit. De : freesurfer-boun...@nmr.mgh.harvard.edu de la part de r04458...@ntu.edu.tw Envoyé : 5 mai 2024 02:44 À : Freesurfer support list Objet : Re: [Freesurfer] Understanding registration with mri_synthmorph

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread r04458005
oun...@nmr.mgh.harvard.edu > on behalf of Antoine Royer > > Sent: Saturday, May 4, 2024 15:06 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Understanding registration with mri_synthmorph > > External Email - Use Caution > > Thanks Malte! &g

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread Hoffmann, Malte,PhD
d.edu Subject: Re: [Freesurfer] Understanding registration with mri_synthmorph External Email - Use Caution Thanks Malte! Would you recommend anything between saving deform transforms generated from synthmorph, between .mgz or .nii.gz? Which in my case, are expected to be passed

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-05-04 Thread Antoine Royer
d.edu Objet : Re: [Freesurfer] Understanding registration with mri_synthmorph Hi Antoine, Thanks for reaching out. Unless you're using a dev build of FreeSurfer, mri_synthmorph may lag behind the dockerized version, which is likely why you see a different behavior. For affine transforms, w

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-04-20 Thread Antoine Royer
External Email - Use Caution Thank you very much!! De : freesurfer-boun...@nmr.mgh.harvard.edu de la part de Hoffmann, Malte,PhD Envoyé : 20 avril 2024 11:16 À : freesurfer@nmr.mgh.harvard.edu Objet : Re: [Freesurfer] Understanding

Re: [Freesurfer] Understanding registration with mri_synthmorph

2024-04-20 Thread Hoffmann, Malte,PhD
Hi Antoine, Thanks for reaching out. Unless you're using a dev build of FreeSurfer, mri_synthmorph may lag behind the dockerized version, which is likely why you see a different behavior. For affine transforms, we switched to LTA format to track the source and target spaces. SynthMorph now save