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It seems to work. Thanks a lot !
Jessica BOURGIN
Laboratoire de Psychologie et Neurocognition
CNRS UMR 5105
Université Savoie Mont Blanc (USMB)
BP 1104
73011 Chambery Cedex France
___
Freesurfer mailin
August 2019 at 11:58
To: freesurfer
Subject: Re: [Freesurfer] Transform hippocampal/amygdala segmentation to
another space
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Dear Juan Eugenio,
Thank you for these precisions.
Following the guidelines of FSL, I computed the following sequence on my
structural
External Email - Use Caution
Dear Juan Eugenio,
Thank you for these precisions.
Following the guidelines of FSL, I computed the following sequence on my
structural image :
bet my_structural my_betted_structural
flirt -ref ${FSLDIR}/data/standard/MNI152_T1_2mm_brain -in my_b
(MIT)
http://www.jeiglesias.com
From: on behalf of Jessica Bourgin
Reply-To: Freesurfer support list
Date: Wednesday, 7 August 2019 at 13:44
To: freesurfer
Subject: Re: [Freesurfer] Transform hippocampal/amygdala segmentation to
another space
External Email - Use Caution
Dear Juan
External Email - Use Caution
Dear Juan Eugenio,
Thanks a lot for your quick response.
I don't understand what you mean exactly by "propagate the hard segmentations".
And when you say to register the subjects to the Brainnetome, do you mean
replace the atlas used by recon-all
Dear Jessica,
There is no intensity image associated with the atlases, so this is not trivial.
I guess you could register your subjects to the atlas, and propagate the hard
segmentations?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http:/
