Re: [Freesurfer] Tracula statistics outputs for version 7.2

2023-07-18 Thread Alan Francis
External Email - Use Caution Hi Chiara - Please ignore the previous email. I set my doB0 = 0, but it gives me this error message: copernicus:~/IMAGING/DTI> trac-all -prep -c dmrirc-109123_7T_4 ERROR: for B0 distortion correction with reverse-polarity DWIs ERROR: or for model-base

Re: [Freesurfer] Tracula statistics outputs for version 7.2

2023-07-18 Thread Alan Francis
External Email - Use Caution Hi King-Wai/ Chiara Thank you for your excellent suggestions. Chiara: I have made the changes you suggested. Can you please check if the config file looks workable? King-Wai - I made the change you suggested. But the problem still persists. I have at

Re: [Freesurfer] Tracula statistics outputs for version 7.2

2023-07-18 Thread Maffei, Chiara,PHD
External Email - Use Caution Hi Alan, It looks like you have specified the ncpts variable but not the pathlist. If you do not specify pathlist, TRACULA will include all 42 tracts by default, so your pathlist and ncpts variables will have different lengths. If you want to focus

Re: [Freesurfer] Tracula statistics outputs for version 7.2

2023-07-18 Thread Alan Francis
External Email - Use Caution Hi King-Wai: I have been running Tracula on 7T images and it keeps giving me an error. The error is as follows: copernicus:~/IMAGING/DTI> trac-all -prep -c dmrirc-109123_7T_2 Unmatched '"'. I have attached my config file. Can you please let me know w