Re: [Freesurfer] Trac-all -preproc cannot find cor-.info

2012-02-22 Thread Martijn Steenwijk
Hi Priti, Thanks for your notice. I thought I disabled dob0, but apparently I didn't... ;-) Now I disabled it and everything works fine! Best, Martijn On Wed, Feb 22, 2012 at 4:57 PM, Priti Srinivasan < rspr...@nmr.mgh.harvard.edu> wrote: > Hi Martin, > > Are you including b0 correction in your

Re: [Freesurfer] Trac-all -preproc cannot find cor-.info

2012-02-22 Thread Priti Srinivasan
Hi Martin, Are you including b0 correction in your preprocessing stream? I can see b0mag.nii.gz in your log file. Did you set dob0 = 1 in your configuration file? If so you have to set also the magnitude and phase maps (using set b0mlist and set b0plist in the configuration file,Check out $FREESU