Re: [Freesurfer] Tool for filling

2011-10-03 Thread Ed Gronenschild
Thank you Nick, this one works fine. Ed On 3 Oct 2011, at 17:53, Nick Schmansky wrote: > i've posted mri_morphology for the mac here: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos- > leopard-intel > > n. > > > On Mon, 2011-10-03 at 11:01 -0400, Bruce Fischl wrote: >> the d

Re: [Freesurfer] Tool for filling

2011-10-03 Thread Nick Schmansky
i've posted mri_morphology for the mac here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/macos-leopard-intel n. On Mon, 2011-10-03 at 11:01 -0400, Bruce Fischl wrote: > the dev build probably didn't complete. Nick? > On Mon, 3 Oct 2011, Ed > Gronenschild wrote: > > > Hi Bruce, >

Re: [Freesurfer] Tool for filling

2011-10-03 Thread Bruce Fischl
the dev build probably didn't complete. Nick? On Mon, 3 Oct 2011, Ed Gronenschild wrote: > Hi Bruce, > > I've grabbed the dev version > > freesurfer-Darwin-leopard-i686-dev.tar.gz (date 2 Oct 2011, 13:10) > at > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ > > and tried > > mri_morph

Re: [Freesurfer] Tool for filling

2011-10-03 Thread Ed Gronenschild
Hi Bruce, I've grabbed the dev version freesurfer-Darwin-leopard-i686-dev.tar.gz (date 2 Oct 2011, 13:10) at ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ and tried mri_morphology fill_holes 26 but got the message that the operation "fill_holes" is not supported. Ed __

Re: [Freesurfer] Tool for filling

2011-09-30 Thread Bruce Fischl
so grab it tomorrow then Ed On Fri, 30 Sep 2011, MGH wrote: > Nightly > > On Sep 30, 2011, at 9:52 AM, Bruce Fischl wrote: > >> when does it get updated? He'll need a new one >> >> On Fri, 30 Sep 2011, MGH wrote: >> >>> Dev builds are found here >>> >>> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/

Re: [Freesurfer] Tool for filling

2011-09-30 Thread MGH
Nightly On Sep 30, 2011, at 9:52 AM, Bruce Fischl wrote: > when does it get updated? He'll need a new one > > On Fri, 30 Sep 2011, MGH wrote: > >> Dev builds are found here >> >> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ >> >> On Sep 30, 2011, at 9:42 AM, Bruce Fischl wrote:

Re: [Freesurfer] Tool for filling

2011-09-30 Thread Bruce Fischl
when does it get updated? He'll need a new one On Fri, 30 Sep 2011, MGH wrote: > Dev builds are found here > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ > > On Sep 30, 2011, at 9:42 AM, Bruce Fischl wrote: > >> I mean not the distributed version. If you let us know what >> softwa

Re: [Freesurfer] Tool for filling

2011-09-30 Thread MGH
Dev builds are found here ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ On Sep 30, 2011, at 9:42 AM, Bruce Fischl wrote: > I mean not the distributed version. If you let us know what > software/hardware environment you are using Krish can get you a binary > On > Fri, 30 Sep 2011,

Re: [Freesurfer] Tool for filling

2011-09-30 Thread Bruce Fischl
I mean not the distributed version. If you let us know what software/hardware environment you are using Krish can get you a binary On Fri, 30 Sep 2011, Ed Gronenschild wrote: > Hi Bruce , > > What do you mean with "dev version"? > > Ed > > On 30 Sep 2011, at 15:22, Bruce Fischl wrote: > >> Hi Ed

Re: [Freesurfer] Tool for filling

2011-09-30 Thread Ed Gronenschild
Hi Bruce , What do you mean with "dev version"? Ed On 30 Sep 2011, at 15:22, Bruce Fischl wrote: > Hi Ed, > > the dev version of mri_morphology will do this: > > mri_morphology fill_holes 26 > > where the 26 specifies the min # of nbrs that must be on for the > output > voxel to be set to 1

Re: [Freesurfer] Tool for filling

2011-09-30 Thread Bruce Fischl
Hi Ed, the dev version of mri_morphology will do this: mri_morphology fill_holes 26 where the 26 specifies the min # of nbrs that must be on for the output voxel to be set to 1 cheers Bruce On Fri, 30 Sep 2011, Ed Gronenschild wrote: > Hi, > > I'm looking for a tool to fill holes of onl