Hi Pedro
they should be based on the input to mris_make_surfaces, which I believe
is brain.finalsurfs.mgz
cheers
Bruce
On Tue, 17 Mar 2015, Pedro Rosa wrote:
Hi, Bruce.
I tried several thresholds in some subjects and it seems to work reallh well.
Thanks for the help!
However, I would like t
Hi, Bruce.
I tried several thresholds in some subjects and it seems to work reallh well.
Thanks for the help!
However, I would like to ask whether I should determine the expert values based
on the raw image (001.mgz) or the normalized image (T1.mgz)? I am asking this
because I believe the normal
Hi Pedro
I can't tell - you need to click around in the images and see what you
think
Bruce
On Wed, 18 Feb 2015, Pedro Rosa - Gmail wrote:
Thanks, Bruce.
I pasted the mri_segment and mris_make_surfaces I found in three subjects’ logs.
Expert opts would be -seg-wlo and -seg-ghi? Which values wo
Thanks, Bruce.
I pasted the mri_segment and mris_make_surfaces I found in three subjects’ logs.
Expert opts would be -seg-wlo and -seg-ghi? Which values would be reasonable?
Do they depend on scanning characteristics or do you have a sort of standard
parameters for the software?
Regards,
Pedro
can you check mri_segmet and mris_make_surfaces and see if the
auto-detected intensity parameters are reasonable? Things like max gray
at csf border and such. If not, you can set them explicitly using the
expert opts - this usually works
Bruce
On Wed, 18 Feb 2015, Pedro Rosa - Gmail
wrote:
