: Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joelle - The last command in the trac-all.log file (mri_probedicom) works
fine for me, when I run it on your dicoms. So there must be something else
after that command that causes the error. What do you see when you run
:15
À : Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joelle - The last command in the trac-all.log file (mri_probedicom) works
fine for me, when I run it on your dicoms. So there must be something else
after that command that causes the error. What do you see when you ru
17 4:54 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Of course, here it is. Thank you for taking a look at it!
Best,
Joëlle
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki, Anastasia
Envoyé : mard
st
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Of course, here it is. Thank you for taking a look at it!
Best,
Joëlle
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki, Anastasia
Envoyé : mardi 25 avril 2017 10:25
À : Freesurfer su
-boun...@nmr.mgh.harvard.edu] on behalf of Joëlle Ismay Rosanne Van
Der Molen [joelle.vandermo...@etu.unige.ch]
Sent: Tuesday, April 25, 2017 4:15 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Hi Anastasia,
I still can't seem to make it run when I don't speci
d.edu] on behalf of Joëlle Ismay Rosanne Van
Der Molen [joelle.vandermo...@etu.unige.ch]
Sent: Tuesday, April 25, 2017 4:15 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Hi Anastasia,
I still can't seem to make it run when I don't specify the
Best,
Joëlle
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki, Anastasia
Envoyé : mercredi 12 avril 2017 19:35
À : Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joelle – I tested one of your dicoms and the gradient table t
boun...@nmr.mgh.harvard.edu>
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
de la part de Yendiki, Anastasia
mailto:ayend...@mgh.harvard.edu>>
Envoyé : jeudi 30 mars 2017 15:20
À : Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joëlle - Can you please send t
support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joëlle - Can you please send the filedrop upload to me too? Thanks!
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Joëlle Ismay Rosanne Van
, March 30, 2017 7:27 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Hi Barbara,
Thank you for the tip, I managed to anonymize my dicom images. I uploaded them
on filedrop.
The scanner used for the acquisition is a Siemens Prisma 3 Tesla.
Best,
Joëlle
Kreilkamp
Envoyé : mercredi 29 mars 2017 14:18
À : Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joëlle,
Which scanner was used to acquire the images? I have used Osirix light in the
past to anonymize my dicom images, maybe you'd like to try that?
Best w
oëlle
*De :* freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki,
Anastasia
*Envoyé :* mercredi 22 mars 2017 15:40
*À :* Freesurfer support list
*Objet :* Re: [Freesurfer] TRACULA tract reconstruction
Hi Joëlle – What images do you pass as input to TRACULA? Do you
De : freesurfer-boun...@nmr.mgh.harvard.edu
de la part de Yendiki, Anastasia
Envoyé : mercredi 22 mars 2017 15:40
À : Freesurfer support list
Objet : Re: [Freesurfer] TRACULA tract reconstruction
Hi Joëlle – What images do you pass as input to TRACULA? Do you
ndermo...@etu.unige.ch>>
Reply-To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Wednesday, March 22, 2017 at 3:55 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Hi Anastasia and A
urfer-boun...@nmr.mgh.harvard.edu] on behalf of Antonin Skoch
[a...@ikem.cz]
Sent: Wednesday, March 08, 2017 10:03 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA tract reconstruction
Dear Joelle,
regarding the conversion to .bvecs, could you please show the examp
Hi Joëlle - I highly recommend using the TRACULA version in 6.0, because it
tries to detect the cases that need to be reinitialized and reruns them
automatically. (It's ok if the anatomical segmentations come from the 5.3
version of recon-all.) Of course, like with any automatic method for dete
Dear Joelle,
regarding the conversion to .bvecs, could you please show the example of
difference between bvecs converted by mri_convert of FreeSurfer and mrconvert
of mrtrix3?
Do you have most recent version of mrtrix3? There have been a quite extensive
discussion on implementation of FSL .bve
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