half
of juergen.haen...@upd.unibe.ch <juergen.haen...@upd.unibe.ch>Sent: Thursday,
November 25, 2021 1:40
AMTo: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>Subject: Re:
[Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals
file External Email - Use
Caution
anks,
Anastasia.
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of
juergen.haen...@upd.unibe.ch
Sent: Thursday, November 25, 2021 1:40 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals file
Exter
.ch<mailto:juergen.haen...@upd.unibe.ch>
mailto:juergen.haen...@upd.unibe.ch>>
Sent: Wednesday, November 24, 2021 12:53 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] TRACULA error wrt
d.edu
Subject: Re: [Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals file
External Email - Use Caution
Dear Anastasia
when I type $FSLDIR in the terminal, I get /usr/local/fsl: permission denied.
this is the right path where fsl is installed.
however, I can start FSL GUI and also othe
lto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of juergen.haen...@upd.unibe.ch<mailto:juergen.haen...@upd.unibe.ch>
mailto:juergen.haen...@upd.unibe.ch>>
Sent: Monday, November 22, 2021 4:47 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
mailt
>>
Sent: Monday, November 22, 2021 4:47 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals file
External Email - Use Caution
Dear Anastas
reesurfer@nmr.mgh.harvard.edu>
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals file
External Email - Use Caution
Dear Anastasia
thank you for providing the bug fix. It works and solved our problem.
However, another (old) problem
surfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] TRACULA error wrt to dwi_orig_las.1.bvals file
External Email - Use Caution
Dear Anastasia
thank you for providing the bug fix. It works and solved our problem.
However, another (old) problem occurred wrt the field map for which we did not
find any so
Hi Jürgen - You have diagnosed the problem correctly. It's specific to the case
when you have 1 DWI run only. I committed a bug fix for this. For now you can
get it from here (and it should get merged into the dev version in a couple of
days):
https://raw.githubusercontent.com/ayendiki/freesurfe
