Re: [Freesurfer] Some brain area missing after running recon-all

2021-03-24 Thread Fischl, Bruce
list Subject: Re: [Freesurfer] Some brain area missing after running recon-all External Email - Use Caution External Email - Use Caution Hi Bruce, I tried to load the ?h.defect_labels, but am getting error messages (“Failed to load Surface PATH_TO_SUBJ/surf/?h.defect_labels

Re: [Freesurfer] Some brain area missing after running recon-all

2021-03-24 Thread Stef Meliss
d.edu>" mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Some brain area missing after running recon-all Hi Stef This is usually the result of a incorrectly fixed topological defect. You can confirm this if the area is present in the ?h.orig.nofix and not in the

Re: [Freesurfer] Some brain area missing after running recon-all

2021-03-23 Thread Fischl, Bruce
r.mgh.harvard.edu>> Subject: Re: [Freesurfer] Some brain area missing after running recon-all Hi Stef This is usually the result of a incorrectly fixed topological defect. You can confirm this if the area is present in the ?h.orig.nofix and not in the ?h.orig. The fix depends on the source

Re: [Freesurfer] Some brain area missing after running recon-all

2021-03-23 Thread Stef Meliss
quot;freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] Some brain area missing after running recon-all Hi Stef This is usually the result of a incorrectly fixed topological defect. You can confirm this if the area is present in the ?h.orig.nofix and not in the ?h.orig. The fix depends on the sour

Re: [Freesurfer] Some brain area missing after running recon-all

2021-03-22 Thread Fischl, Bruce
Hi Stef This is usually the result of a incorrectly fixed topological defect. You can confirm this if the area is present in the ?h.orig.nofix and not in the ?h.orig. The fix depends on the source of the defect. It might be as simple as drawing a single voxel back into the wm.mgz, but might ne