Re: [Freesurfer] Running separate recon-all for each hemisphere

2015-01-03 Thread Douglas Greve
I think you can only do autorecon1 and 2 separately for each hemi doug On 1/2/15 4:39 AM, pradeep mahato wrote: Hello experts, I ran recon-all -all -hemi lh -s, it failed due to some rh.white file missing . Can someone tell me how i can run autorecon1 , autorecon2 and autorecon3 separately fo

Re: [Freesurfer] Running separate recon-all for each hemisphere

2015-01-02 Thread Roger Koot
Hi Pradeep, I'm not sure about the -hemi problem, but you can tell recon-all to use all processors in your box, which speeds up some of the steps. An other option is to install a CUDA capable hardware device (any recent nvidia video card (very cheap, no ECC ram, less available ram), or a dedic