You'll need to merge the WM parcellation labels with those of their
matching GM parcellations. We do not have explicit software to do this.
You can do it in matlab, something like
a = MRIread('aparc.a2009s+aseg_liberal.mgz");
ind = find(a.vol == 3030); % 3030 = wm-lh-superiortemporal from
Free
Dear all,
In an earlier post, I was asking for help implementing dilated ROIs.
I was using Doug's suggestion
mri_aparc2aseg --subject 01 --a2009s --labelwm --wmparc-dmax 2 --o
aparc.a2009s+aseg_liberal.mgz
followed by
mri_label2vol --seg aparc.a2009s+aseg_liberal.mgz --regheader orig.mgz --o
roi
Dear Thomas and Doug,
Thanks a lot for your replies, I believe you fully answered my question.
@Thomas: The reason I would like to dilate masks into white matter is that
although the masks are quite accurate for structural volumes, the
functional data doesn't perfectly fit the structural (even wh
Hi Martin,
I am a little confused. Can you explain a little more about what you
need? Do you want the freesurfer cortical ROIs dilated into the
surrounding regions like white matter and CSF or something? If so,
then Doug's suggestion sounds reasonable.
In the case of my parcellation, I ran the MN
There is not an easy way to do that, though Thomas might want to chime
in. I would probably use the code that generates the wmparc
(mri_aparc2aseg --labelwm) to create labels in the adjacent WM out to a
few mm (--wmparc-dmax 2), then merge the WM labels with the GM labels
On 07/14/2015 08:18 AM
