> Douglas
> > Greve
> > *Reply-To: *Freesurfer support list
>
> > *Date: *Tuesday, April 17, 2018 at 9:33 AM
> > *To: *"freesurfer@nmr.mgh.harvard.edu"
>
> > *Subject: *Re: [Freesurfer] Recon-all w/ Ham
support list
> *Date: *Tuesday, April 17, 2018 at 9:33 AM
> *To: *"freesurfer@nmr.mgh.harvard.edu"
> *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas
>
> Sorry, just seeing that you also want cortical summaries. Those might
33 AM
> *To: *"freesurfer@nmr.mgh.harvard.edu"
> *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas
>
> Sorry, just seeing that you also want cortical summaries. Those might
> be easier. You should run recon-all on the T1 template for the
> hammersmith. You can
Douglas Greve
Reply-To: Freesurfer support list
Date: Tuesday, April 17, 2018 at 9:33 AM
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: Re: [Freesurfer] Recon-all w/ Hammersmith atlas
Sorry, just seeing that you also want cortical summaries. Those might be
easier. You should run re
Sorry, just seeing that you also want cortical summaries. Those might be
easier. You should run recon-all on the T1 template for the hammersmith.
You can then create your own hammersmith annotation by mapping the atlas
labels onto the surface (mri_vol2surf) and then mris_seg2annot. You can
then
There is not an easy way to do this. If you have access to the original
hammersmith data, you can run each subject through FS, copy/convert the
manual labels into the conformed space for each subject, then build your
own volume-based atlas. If that is something you are up for, let me know
and I
