Re: [Freesurfer] REPOST cluster feature extraction from qdec output

2016-09-29 Thread Douglas N Greve
1) Sorry, I don't understand what you are trying to do 2) Depends on what you are testing. If you are looking at the slopes of the covariates, then demeaning is not important. If you are looking at group differences, you should first look for a difference in the slopes. If there is no significa

Re: [Freesurfer] REPOST cluster feature extraction from qdec output

2016-09-29 Thread Damien MARIE
Hi, Many thanks for your prompt reply Pr. Greve. I did : mri_glmfit --y /home/damien/bin/freesurfer/subjects/qdec/RH_Dys-CT_CSA_AgeGenderWRCSA/y.mgh --fsgd /home/damien/bin/freesurfer/subjects/qdec/RH_Dys-CT_CSA_AgeGenderWRCSA/qdec.fsgd dods --glmdir /home/damien/bin/freesurfer/subjects/qde

Re: [Freesurfer] REPOST cluster feature extraction from qdec output

2016-09-28 Thread Douglas Greve
Those are not residuals. If you want residuals, you will need to run mri_glmfit from the command line adding --eres-save. You can get the command line from the mri_glmfit.log file in the glmdir On 9/28/16 10:58 AM, Damien MARIE wrote: Dear FreeSurfers, Sorry for the repost. I’m still trying