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Hi Bruce,
I sent you the whole directory if one subject un which we had some problems
extending the pial surface. Se would like extend the pial surface without
affect the wm boundary.
Did you have a chance to review It?
Thanks in advance,
Cheers,
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Hi Bruce,
I tried to upload the whole subject dir in the ftp site but i didn´t works.
I send you the file in 7zip format trough a google drive link . I would
know how can i extend the pial surface without affect the wm boundaries
because the pial surf
why don't you tar and gzip the whole subject dir and upload it to our ftp
site and we will take a look
cheers
Bruce
On Tue, 1 May 2018, Miguel Ángel Rivas
Fernández wrote:
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Hi Bruce,
The problem is that the reconstruction of the pial surface is
External Email - Use Caution
Hi Bruce,
The problem is that the reconstruction of the pial surface is incorrect. I
tried to put control points on some voxels but did a wrong reconstruction
because in this region there is no voxel with an intensity between 95-110. How
can I improve
that looks like a big temporal lobe bias field to me. Is the WM in the
temporal lobes significantly darker than 110? I can't tell if some of the
stuff in e.g. the left medial temporal lobe is WM or GM. Try putting some
control points in regions where the intensity is in say [95, 110) and see
if
Hi Saum
it is, but you need to figure out why it isn't getting out far enough.
The easiest way is to override the intensity statistics that are computed
automatically in mris_make_surfaces. You can see them if you look in your
recon-all.log. For example if the lowest value gm is allowed to be
