Hi Corinna,
you need a single folder with all subjects and all time point:
so the subjects directory will look like:
me1
me2
me3
you1
you2
...
You can create such a folder and insert symbolic links to the original
subject folders if you want to keep your structure.
Then create the base in this
Hi Martin,
I think this is what you're looking for. If not, let me know.
recon-all -base 137_S_0158_template -tp
/Applications/freesurfer/subjects/corinna/ADNI/BL/137_S_0158/mri/norm.mgz
-tp
/Applications/freesurfer/subjects/corinna/ADNI/12mos/137_S_0158/mri/norm.mgz
-tp
/Applications/freesurfer/s
Hi corinna,
Can you send the corresponding call to recon-all that your script generates?
Best Martin
On May 14, 2012, at 18:27, Corinna Bauer wrote:
> Hello all,
> I am trying to create a template for longitudinal processing and am running
> into some problems generating the file. I have many
