Re: [Freesurfer] Mask custom ROI with automated parcellation (aparc)

2014-07-30 Thread Bastian Cheng
works perfectly, thank you! On 28 July 2014 19:27, Douglas N Greve wrote: > > Does mri_mask work? > > On 07/28/2014 12:50 PM, Bastian Cheng wrote: >> Thank you, Douglas! >> >> Is there a way to mask my functional ROI with these binarized aparc ROIs? >> >> I guess what I want to do is: ROIfunctio

Re: [Freesurfer] Mask custom ROI with automated parcellation (aparc)

2014-07-28 Thread Douglas N Greve
Does mri_mask work? On 07/28/2014 12:50 PM, Bastian Cheng wrote: > Thank you, Douglas! > > Is there a way to mask my functional ROI with these binarized aparc ROIs? > > I guess what I want to do is: ROIfunctional * > ROI_precentral_binarized > masked ROIfunctional limted to precentral > region >

Re: [Freesurfer] Mask custom ROI with automated parcellation (aparc)

2014-07-28 Thread Bastian Cheng
Thank you, Douglas! Is there a way to mask my functional ROI with these binarized aparc ROIs? I guess what I want to do is: ROIfunctional * ROI_precentral_binarized > masked ROIfunctional limted to precentral region best regards, Bastian. On 28 July 2014 18:25, Douglas N Greve wrote: > > Try

Re: [Freesurfer] Mask custom ROI with automated parcellation (aparc)

2014-07-28 Thread Douglas N Greve
Try using mri_binarize on the aparc+aseg.mgz volume (aparc+aseg has the same ROIs as aparc but in volume format). You can map this into your functional space. doug On 07/25/2014 06:29 AM, Bastian Cheng wrote: > Dear Freesurfers, > > Is there a way to mask a custom ROI (or label) with a volume /