Re: [Freesurfer] Maps/seed on surafce

2016-07-05 Thread Douglas N Greve
Have you verified that the Anat-Func registration in FreeSurfer is correct? You can view it with tkregister-sess. On 06/16/2016 10:26 AM, Martin Juneja wrote: > Hi Dr. Greve, > > I used following command for this: > > mkanalysis-sess -analysis LH_XY.surf.lh > -surface fsaverage lh -fwhm 5 -not

Re: [Freesurfer] Maps/seed on surafce

2016-06-16 Thread Martin Juneja
Hi Dr. Greve, I used following command for this: mkanalysis-sess -analysis LH_XY.surf.lh -surface fsaverage lh -fwhm 5 -notask -taskreg LH_XYZ.dat 1 -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 3. Thanks. On Wed, Jun 15, 2016 at 3:07 PM, Douglas N Greve w

Re: [Freesurfer] Maps/seed on surafce

2016-06-15 Thread Douglas N Greve
what was your mkanalysis-sess command? On 06/08/2016 02:10 PM, Martin Juneja wrote: > Dear FreeSurfer and SPM experts, > > I am trying to calculate functional connectivity maps using FreeSurfer > pipeline: > http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough. > > Af