According to Bruce's request I repost the rest of thread:
We set up our our hippocampal subfield T2 protocol based on the ADNI
protocol (with some minor differences) as suggested by Iglesias. However,
we see an artefact similar to the image found in ADNI2 training manual
(page 28): http://adni.lon
sorry Gabor, can you repost the rest of the thread? What was the artefact?
On Mon, 26 Feb 2018, Gabor Perlaki wrote:
> Does anybody else have a comment on the experienced artefact?
>
>
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Does anybody else have a comment on the experienced artefact
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Does anybody else have a comment on the experienced artefact?
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Dear Iglesias,
We set up our our hippocampal subfield T2 protocol based on the ADNI
protocol (with some minor differences). However, we see an artefact similar
to the image found in ADNI2 training manual (page 28):
http://adni.loni.usc.edu/wp-content/uploads/2012/10/ADNI2MRITrainingManual_2014.pdf
, 23 January 2018 at 06:37
To: freesurfer
Subject: Re: [Freesurfer] MRI protocol for hippocampal subfield segmentation
Dear Iglesias,
Do you think that it is useful to also use a fieldmap for hippocampal subfield
segmentation? Can Freesurfer's hippocampal subfield segmentation use it? I'm
Dear Iglesias,
Do you think that it is useful to also use a fieldmap for hippocampal
subfield segmentation? Can Freesurfer's hippocampal subfield segmentation
use it? I'm not sure that due to the limited resolution of the fieldmap and
due to registration issues it is worth to acquire a fieldmap fo
: [Freesurfer] MRI protocol for hippocampal subfield segmentation
Dear Eugenio,
The ADNI protocol is quite similar to the default Siemens highres hippocampus
protocol, however I haven't find a more detailed version of this one:
http://adni.loni.usc.edu/wp-content/uploads/2017/07/ADNI3-MRI-protocol
Dear Eugenio,
The ADNI protocol is quite similar to the default Siemens highres
hippocampus protocol, however I haven't find a more detailed version of
this one: http://adni.loni.usc.edu/wp-content/uploads/2017/07/ADNI3-
MRI-protocols.pdf
Do you know a more detailed version of the ADNI protocol?
Hi Gabor,
A good place to start is ADNI’s high-res hippocampal T2 protocol. You can find
the details on their website. It’s a coronal, anisotropic acquisition of a slab
covering the hippocampus (0.4mm in plane, 2mm thickness, 25-30 slices). I’ve
been playing a bit with more isotropic acquisition
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