By default they are in talairach. But you can get mni305 by adding
--nofixmni to the surfcluster command line
On 08/02/2016 03:36 PM, Sabin Khadka wrote:
> Hi Doug, Thanks. Are these coordinates in talairach or MNI space? From
> previous post you mentioned these are in mni305 space but if I look
ps. you can always just load the xyz in the label into matlab and
compute the centroid
On 8/1/16 10:23 AM, Sabin Khadka wrote:
Anyone?
Cheers,
Sabin Khadka
On Fri, Jul 29, 2016 at 2:47 PM, Sabin Khadka
mailto:mr.sabinkha...@gmail.com>> wrote:
Hi Doug, I tried to pick up from the threa
Try setting thmin to something small but non-zero (eg, 10e-6)
On 8/1/16 10:23 AM, Sabin Khadka wrote:
Anyone?
Cheers,
Sabin Khadka
On Fri, Jul 29, 2016 at 2:47 PM, Sabin Khadka
mailto:mr.sabinkha...@gmail.com>> wrote:
Hi Doug, I tried to pick up from the thread below to get MNI
coo
Anyone?
Cheers,
Sabin Khadka
On Fri, Jul 29, 2016 at 2:47 PM, Sabin Khadka
wrote:
> Hi Doug, I tried to pick up from the thread below to get MNI coordinates
> of each destrieux parcellation region.
>
>
>
> https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-July/032037.html
>
> I create
Hi Yolanda, you can run
mris_convert lh.white lh.white.asc
to produce a text file of the vertices and their coordinates. We also
have a matlab function to read in surfaces.
doug
On 06/20/2012 02:44 AM, Yolanda Vives wrote:
> Thank you Doug, I think that my question was not precise enough. I
> wo
Thank you Doug, I think that my question was not precise enough. I would
like to know which function I can use to obtain a vector with the number of
vertices and the corresponding MNI coordinates.
Regards,
Yolanda
2012/6/19 Douglas N Greve
> For fsaverage, the coordinates are the MNI305 coordin
For fsaverage, the coordinates are the MNI305 coordinates.
doug
On 06/19/2012 08:48 AM, Yolanda Vives wrote:
> Dear Freesurfer experts,
>
> How could I know the MNI coordinates of the 163.842 vertices of the
> left hemisphere of fsaverage?
>
> Best regards,
> Yolanda
>
>
>
> _
