Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Nick Schmansky
you will need to use the rh9 freesurfer distribution on rhel3, since rhel3 appears not to contain libstdc++.so.6. also, you will need to install libglut, as it appears to not be installed on your system. On Wed, 2006-04-26 at 16:01 -0500, Binu Thomas wrote: > Thank you very much for your help. T

Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Binu Thomas
Thank you very much for your help. The configuration for FreeSurfer is done sucessfully. I have pasted the output during configuration: [EMAIL PROTECTED] local]# setenv FREESURFER_HOME /usr/local/freesurfer [EMAIL PROTECTED] local]# source $FREESURFER_HOME/SetUpFreeSurfer.csh freesurfer-L

Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Nick Schmansky
Remove the angle brackets from the pathname, that is, the < and > chars. In Unix, these are the redirection commands, and not valid pathname characters. So, type this: setenv FREESURFER_HOME /usr/local/freesurfer source $FREESURFER_HOME/SetUpFreeSurfer.csh On Wed, 2006-04-26 at 11:42 -0500,

Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Binu Thomas
Thanks for the reply! Here is a detail of all that I did. I downloaded the RH9 version of the software to my /usr/local directory and installed it with the "tar xzvf" command. I then changed the shell to tcsh and then the rest of the output is as follows: [EMAIL PROTECTED] ~]# set echo=1 [EMAIL PR

Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Nick Schmansky
Also, try enabling command echoing first, like this: set echo=1 source $FREESURFER_HOME/SetUpFreeSurfer.csh this will print-out details of the script as it runs. On Wed, 2006-04-26 at 12:27 -0400, Bruce Fischl wrote: > Hi Binu, > > can you send us the complete screen output from what you t

Re: [Freesurfer] Help with Freesurfer Installation

2006-04-26 Thread Bruce Fischl
Hi Binu, can you send us the complete screen output from what you tried? thanks, Bruce On Wed, 26 Apr 2006, Binu Thomas wrote: Dear all, I posted a message yesterday regarding the same problem, didn't get much help, hoping to get some help today. I am running Red Hat Enterprise Lin

Re: [Freesurfer] Help with Freesurfer installation

2006-04-25 Thread Binu Thomas
Yes FREESURFER_HOME was set to the installed directory with the etenv command. The CentOS4 version of the software was installed on Red Hat Linux Enterprise Edition WS 3. >>> Nick Schmansky <[EMAIL PROTECTED]> 04/25/06 3:18 PM >>> Is FREESURFER_HOME set to where the tarball was installed? What

Re: [Freesurfer] Help with Freesurfer installation

2006-04-25 Thread Nick Schmansky
Is FREESURFER_HOME set to where the tarball was installed? What OS is this installed on? On Tue, 2006-04-25 at 15:16 -0500, Binu Thomas wrote: > Dear Listserv, > I am trying to install the freesurfer > "CentOS4 v.3.0.2" stable release on Red Hat Linux Enterprise Editi