Sorry for the delay. First run mni152reg for each subject (should take
only a few min, but needs FSL I think). Then run
mri_label2vol --aparc+aseg --temp MNI152_2mm.nii.gz --reg
$SUBJECTS_DIR/subject/mri/transforms/reg.mni152.2mm.lta --o
aparc+aseg.subject.mni152_2mm.nii.gz
On 11/14/2017 06
Hi all,
I am still struggling with my previous question
I processed a bunch of subjects using recon-all, but now I would like to
get labels from aparc.a2009s.annot from each subject in MNI space in nii
from. How can I obtain the Destrieux labels in nii format in MNI (2mm)
How can I do this?
Than
Hi Daiana
run mri_vol2vol --help. It has a bunch of examples and quite extensive help
(thank you Doug!)
Bruce
On Thu, 9 Nov 2017, Daya P wrote:
> Hi Bruce,
> Can you give me some example code? I am not sure where the talairach would go?
>
>
> On Thu, Nov 9, 2017 at 1:21 PM, Bruce Fischl
> w
Hi Bruce,
Can you give me some example code? I am not sure where the talairach would
go?
On Thu, Nov 9, 2017 at 1:21 PM, Bruce Fischl
wrote:
> Hi Daiana
>
> You should be able to use mri_vol2vol on the aparc+aseg.mgz and the
> talairach.xfm in the subject's mri/transforms dir.
>
> cheers
> Bru
Hi Daiana
You should be able to use mri_vol2vol on the aparc+aseg.mgz and the
talairach.xfm in the subject's mri/transforms dir.
cheers
Bruce
On Thu, 9 Nov 2017, Daya P wrote:
> Hi All,
> I processed a bunch of subjects using recon-all, but now I would like to get
> labels from
> aparc.a2009s
