Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-13 Thread Douglas N Greve
Sorry, I was going through "old" emails and did not see this had already been addressed. Please ignore, which I'm sure most of you were doing anyway :-) On 05/13/2014 01:37 PM, Douglas N Greve wrote: > This is a very vague request. What kind of connectivity analysis? fMRI > or DTI? What softwar

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-13 Thread Douglas N Greve
This is a very vague request. What kind of connectivity analysis? fMRI or DTI? What software are you using? On 05/08/2014 05:43 AM, Jutta Ernst wrote: > > > Dear Freesurfer's > > I draw a roi to extract the cortical thickness for my two groups and > that worked fine. > Now I'm trying to export

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
Thank you, that solved it :-)cheers > Am 08.05.2014 um 15:56 schrieb Bruce Fischl : > > then you probably want to use mri_label2vol to sample it into the volume. > If the output name has the extension .nii it will be in nifti format > > cheers > Bruce > > > >> On Thu, 8 May 2014, Jutta Ernst

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
It's a label file... On 05/08/2014 02:56 PM, Bruce Fischl wrote: > and what format is your ROI in? > On Thu, 8 May 2014, Jutta Ernst wrote: > >> Hi >> >> Nifti would be great and the software would be Data Processing Assistant for >> Resting-State fMRI (DPARSF). >> >> Cheers, Jutta >> >> >> On 05

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
then you probably want to use mri_label2vol to sample it into the volume. If the output name has the extension .nii it will be in nifti format cheers Bruce On Thu, 8 May 2014, Jutta Ernst wrote: > It's a label file... > > > On 05/08/2014 02:56 PM, Bruce Fischl wrote: >> and what format is you

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
and what format is your ROI in? On Thu, 8 May 2014, Jutta Ernst wrote: > Hi > > Nifti would be great and the software would be Data Processing Assistant for > Resting-State fMRI (DPARSF). > > Cheers, Jutta > > > On 05/08/2014 02:38 PM, Bruce Fischl wrote: > > Hi Jutta > > we need more detail

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Jutta Ernst
Hi Nifti would be great and the software would be Data Processing Assistant for Resting-State fMRI (/DPARSF/). Cheers, Jutta On 05/08/2014 02:38 PM, Bruce Fischl wrote: Hi Jutta we need more details - what format are you trying to conver the ROI to? What software are you planning to use to

Re: [Freesurfer] Fwd: extracting rois for connectivity analysis

2014-05-08 Thread Bruce Fischl
Hi Jutta we need more details - what format are you trying to conver the ROI to? What software are you planning to use to do the connectivity analysis? cheers Bruce On Thu, 8 May 2014, Jutta Ernst wrote: > > > Dear Freesurfer's > > I draw a roi to extract the cortical thickness for my two