Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology

2021-05-07 Thread Hoopes, Andrew
urfer-boun...@nmr.mgh.harvard.edu on behalf of Hoopes, Andrew Sent: Friday, May 7, 2021 5:01 AM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology Hi Renat, The third defect is too large and it’s causing a crash. When I run it, it hangs forever at:

Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology

2021-05-07 Thread Yakupov, Renat /DZNE
of Hoopes, Andrew Sent: Friday, May 7, 2021 5:01 AM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology Hi Renat, The third defect is too large and it’s causing a crash. When I run it, it hangs forever at: CORRECTING DEFECT 3 (vertices=88

Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology

2021-05-06 Thread Yakupov, Renat /DZNE
ngs 😊 Best wishes, Renat. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Hoopes, Andrew Sent: Wednesday, May 5, 2021 7:51 PM To: Freesurfer support list Subject: Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology Hi Renat, That

Re: [Freesurfer] Freesurfer 7 crashes during mris_fix_topology

2021-05-05 Thread Hoopes, Andrew
Hi Renat, That 3rd defect is fairly large – normally it would hang but it’s possible you’re running out of memory. If you can zip the subject and file drop it to us, we can take a look: https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange best, Andrew From: freesurfer-boun...@nmr.mgh.har