Re: [Freesurfer] FreeSurfer in fmriprep

2024-08-01 Thread Tengwen Fan
: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FreeSurfer in fmriprep The log file says that recon-all finished without error. The command (robust register) was not called during recon-all. It must be called by fmriprep at some point. I don't understand what they are trying to d

Re: [Freesurfer] FreeSurfer in fmriprep

2024-07-31 Thread Douglas N. Greve
bject:* Re: [Freesurfer] FreeSurfer in fmriprep You don't often get email from dgr...@mgh.harvard.edu. Learn why this is important <https://aka.ms/LearnAboutSenderIdentification> please send the recon-all.log file in the scripts folder On 7/23/2024 2:14

Re: [Freesurfer] FreeSurfer in fmriprep

2024-07-29 Thread Tengwen Fan
Douglas N. Greve Sent: Monday, July 29, 2024 12:26 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FreeSurfer in fmriprep You don't often get email from dgr...@mgh.harvard.edu. Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> please sen

Re: [Freesurfer] FreeSurfer in fmriprep

2024-07-29 Thread Douglas N. Greve
please send the recon-all.log file in the scripts folder On 7/23/2024 2:14 PM, Tengwen Fan wrote: External Email - Use Caution Dear FreeSurfer Developers, I hope this email finds you well! I am using fMRIprep to do pre-processing. The fMRIprep combines methodology from AFNI, ANTs, F