d.edu/fswiki/mri_label2label
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Yang Yifan
Sent: Friday, February 14, 2025 5:55 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] FreeSurfer coordinates
External Email - Use Caution
Hi Yujing,
Many thanks for your repl
External Email - Use Caution
Hi Yujing,
Many thanks for your reply! The email didn’t come through to my inbox and I
just found it in the online archive.
Regarding the coordinate conversion, I had a look at the link but didn’t find
MNI 305 related information. It would be very h
The coordinates reported in .label are in Freesurfer tkregister RAS space. You
can use mri_label2label to map them to MNI 305 space
https://surfer.nmr.mgh.harvard.edu/fswiki/mri_label2label
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Yang Yifan
Sent: Wednesday, February 5
There is not an easy way. Start by converting the annotation to a
segmentation (mri_annotation2label with --seg output). Binarize the
label you are interested in (mri_binarize --i annotseg.mgh --match 2021
--o rh-pericalcarine.mgh), then run mri_surfcluster --in
rh-pericalcarine.mgh --thmin .5
Am 14.02.2011 18:59, schrieb Douglas N Greve:
> I have created some use cases on how to transform coordinates in one
> space to those in another space (eg, a point on the surface to MNI305
> space or to the col, row, slice of a functional volume). Let me know if
> you have any questions or have ot
