Hi Bruce,
When I run the last stage of the ex-vivo processing (recon-all -cortribbon
-sphere -surfreg -cortparc -parcstats -subjid $SUBID -noaseg), the
parcellation labels come out in the wrong place. I haven't been able to
figure out why this is happening, so I was wondering if its possible that
t
Hi John
this is pretty puzzling. Is it causing any problems? tkmedit has been
deprecated and it may just not be properly reading some header information
or other. If nothing else is affected you can probably ignore it
cheers
Bruce
On Mon, 29 Feb 2016,
John Plass wrote:
> Hi Bruce,
> Thanks
Hi Bruce,
Thanks for your help. In freeview, the surface outline overlays on the
volume correctly, and both the volume and the surface are oriented
correctly in terms of R-L, A-P, and S-I axes. In tkmedit, the volume is
oriented correctly, but the surface appears to be oriented with some of the
axe
Hi John
when you say that they are oriented correctly in freeview, does that mean
that they just overlay properly on the volume? Or that e.g. what freeview
thinks is anterior is actually anterior, etc...?
cheers
Bruce
On Mon, 29 Feb 2016, John
Plass wrote:
Hello Freesurfer Experts,
I wr
