Also, in case anyone is interested -- if you have a brik volume in the
subject folder, specifying mri/orig/001.mgz gives the same error as
specifying orig/001.mgz, at least for me. So that wasn't the cause of the
problem.
John
On Thu, Oct 23, 2008 at 7:44 AM, John Sheppard <
[EMAIL PROTECTED]> w
Hey Krish,
Thanks for your input. Good idea too, never thought about doing that.
Tried this in command line and worked without a hitch. Then i realized if
you just use command line what I did before works as well. The error must
somehow be resulting from issues with tcsh or something. But I fo
Hey Bruce,
Here's the command line I'm using - sorry realized I should've included it
after sending the email:
It just goes to the subject folder ($subject-$scan) and then does it's thing
- already in tcsh shell with all the environment variables set and the .csh
file sourced. Volume_ns+orig.BRIK
Hi John,
can you send us the command line you are running?
cheers,
Bruce
On Wed, 22 Oct 2008, John
Sheppard wrote:
Hey everyone,
I'm having some issues trying to run the volume pipeline using .BRIK input
from afni (hence running mri_convert command directly). The problem occurs
at the end
