Re: [Freesurfer] Editing brain.finalsurfs.mgz

2016-04-29 Thread maryam koochaki
Hi Bruce,Thank you for the response. Maryam On Friday, April 29, 2016 1:54 PM, Bruce Fischl wrote: Hi Maryam I think it would be foreach hemi (lh rh) mris_make_surfaces -whiteonly -mgz \     -T1 ${hemi}.brain.finalsurfs $henmi mris_make_surfaces -nowhite -orig_pial white   

Re: [Freesurfer] Editing brain.finalsurfs.mgz

2016-04-29 Thread Bruce Fischl
Hi Maryam I think it would be foreach hemi (lh rh) mris_make_surfaces -whiteonly -mgz \ -T1 ${hemi}.brain.finalsurfs $henmi mris_make_surfaces -nowhite -orig_pial white -T1 ${hemi}.brain.finalsurfs $henmi if you want, you can also use -output .test and it will add .test to