Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2018-08-06 Thread Douglas N. Greve
It says that in the input (IXI015-HH-1258-DTI-00.nii.gz) has only one frame, which probably means that it is not the right input On 08/06/2018 04:33 PM, Renew Andrade wrote: > > External Email - Use Caution > > Hello Community! > > I have an issue while running dt_recon because as can be

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-31 Thread Douglas N Greve
that looks like the right size. I am stumped. What version of FS are you using? Do you have access to other versions? On 01/31/2014 02:50 PM, Wanda Truong wrote: > This is what I get: > [Vinas-iMac:Wanda_SFS/qdec/Untitled] vinagoghari% ls -l y.mgh > -rw-r--r-- 1 vinagoghari staff 1055844047

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-31 Thread Douglas N Greve
OK, it is y.mgh that is definitely wrong. Can you send me the result of ls -l y.mgh On 01/31/2014 02:37 PM, Wanda Truong wrote: > Hi Doug, > > Here's what I get for mri_info lh.area.fwhm10.fsaverage.mgh: > > [Vinas-iMac:~/Documents/Wanda/Wanda_SFS] vinagoghari% mri_info > lh.area.fwhm10.fsaverag

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Douglas N Greve
I don't know, it is a bit bizarre. Can you run mri_info on both lh.area.fwhm10.fsaverage.mgh and Untitled/y.mgh and send me the results? On 01/30/2014 05:01 PM, Wanda Truong wrote: > Hi Doug, > > Same thing happens with the other half. I'm wondering what file is > used for Y - is it lh.area.fw

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Wanda Truong
Hi Doug, Same thing happens with the other half. I'm wondering what file is used for Y - is it lh.area.fwhm10.fsaverage.mgh? and why does it have an input number that is different from X, which should be the number of subjects? Thanks, Wanda On 30 January 2014 14:19, Douglas N Greve wrote: >

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Douglas N Greve
That should be enough space. Can you try it with the other half? I'm thinking it might be one subject who is messing things up. On 01/30/2014 04:04 PM, Wanda Truong wrote: > Hi Doug, > > I currently have 40.64 GB of disk space (is this enough)? > > I tried just now with half the subjects and it

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Wanda Truong
Hi Doug, I currently have 40.64 GB of disk space (is this enough)? I tried just now with half the subjects and it gave me the same error. I was successful in completing a thickness analysis using this same method, the only thing difference this time is that I am trying to do a surface area analys

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Douglas N Greve
Hi Wanda, I can see that it is failing, I just can't see why it is failing (and cannot replicate it here). Can you try a couple of things. First, make sure that the disk is not filling up. Next, can you try it with, say, half the subjects? Does this always occur or is it just recently? doug O

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-28 Thread Douglas N Greve
Can you send the terminal output that starts with mris_preproc? On 01/28/2014 02:01 PM, Wanda Truong wrote: > Hi everyone, > > I get this error when running surface area analysis in QDEC: > > Vinas-iMac:~/Documents/Wanda/Wanda_SFS] vinagoghari% mri_glmfit --y > /Users/vinagoghari/Documents/Wanda