Re: [Freesurfer] dev version

2018-02-01 Thread Iglesias Gonzalez, Eugenio
Dear Zheng, Question 1: In the dev version, all labels are rendered by default. In previous versions: it’s probably best to open the file twice, and render the hippo with the range 200-249 and the amygdala with the range 7000-7020. Question 2: open lh.hippoAmygLabels-T1.v2x.mgz instead of lh.h

Re: [Freesurfer] dev version of mri_ca_label memory leak?

2015-07-30 Thread Chris Adamson
: Freesurfer support list Subject: Re: [Freesurfer] dev version of mri_ca_label memory leak? you can probably just email them to me as they aren't terribly big. Make sure you get every file that is on the mri_ca_label command line cheers Bruce On Thu, 30 Jul 2015, Chris Adamson wrote: > Ok

Re: [Freesurfer] dev version of mri_ca_label memory leak?

2015-07-30 Thread Bruce Fischl
-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, 30 July 2015 12:03 AM To: Freesurfer support list Subject: Re: [Freesurfer] dev version of mri_ca_label memory leak? Hi Chris if you send me all the inputs to mri_ca_label and your

Re: [Freesurfer] dev version of mri_ca_label memory leak?

2015-07-29 Thread Chris Adamson
Ok how can I send you the files and commands? -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Thursday, 30 July 2015 12:03 AM To: Freesurfer support list Subject: Re: [Freesurfer] dev version

Re: [Freesurfer] dev version of mri_ca_label memory leak?

2015-07-29 Thread Bruce Fischl
Hi Chris if you send me all the inputs to mri_ca_label and your exact command line I'll see if I can replicate it and either fix it or send you a new version. Or you can try the current dev version and see if it fixes things cheers Bruce On Wed, 29 Jul 2015, Chris Adamson wrote: Devs,  

Re: [Freesurfer] Dev Version

2015-05-26 Thread Bruce Fischl
Hi Hassan try: chmod a+x FREESURFER_HOME/bin/freeview.bin cheers Bruce On Tue, 26 May 2015, Hassan bakhshi wrote: Hi I downloaded the centos 6 freeview.bin and replaced it into $freesurferhome/bin/freeview.bin but now i cant open freeview, it says that it is not a executable file and it i

Re: [Freesurfer] Dev Version

2015-05-26 Thread dgw
Did you check the permissions? You have to make sure the permissions are executable. HTH D On 5/26/15 6:33 AM, Hassan bakhshi wrote: > Hi > I downloaded the centos 6 freeview.bin and replaced it into > $freesurferhome/bin/freeview.bin > > but now i cant open freeview, it says that it is not a ex

Re: [Freesurfer] dev version of mri_glmfit for intel macs

2007-08-06 Thread Nick Schmansky
Cate, There is a current dev distribution of freesurfer for the Intel Mac here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/dev/macintel Its the .dmg file, which you can drag and drop to your desktop, then double-click to start the install GUI. A new mri_glmfit is also in tha

Re: [Freesurfer] dev-version/new version question.

2006-03-09 Thread Jenni Pacheco
As a note for everyone since this question has come up a lot, one of the many cool new features of recon-all is that it saves all of your edits, every time, by default. You have to specify with certain flags when you want it to ignore your edits (see https://surfer.nmr.mgh.harvard.edu/fswiki/O