Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Emanuel Alvaredo
External Email - Use Caution Thanks! Emanuel On Mon, Apr 1, 2019 at 12:13 PM Ruopeng Wang wrote: > Hi Emanuel, > > You can use this command to load customized color table file: > > freeview -v brain.mgz:colormap=lut:lut=color_table_file.txt > > Best, > Ruopeng > On 4/1/19 10:40

Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Ruopeng Wang
Hi Emanuel, You can use this command to load customized color table file: freeview -v brain.mgz:colormap=lut:lut=color_table_file.txt Best, Ruopeng On 4/1/19 10:40 AM, Emanuel Alvaredo wrote: Thanks Bruce, Do you know what is the command line option? Thanks! Emanuel On Mon, Apr 1, 2019 at 1

Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Emanuel Alvaredo
External Email - Use Caution Thanks Bruce, Do you know what is the command line option? Thanks! Emanuel On Mon, Apr 1, 2019 at 11:34 AM Bruce Fischl wrote: > I see. You can give freeview a custom lookup table on the command line > > cheers > Bruce > > > On Mon, 1 Apr 2019, Eman

Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Bruce Fischl
I see. You can give freeview a custom lookup table on the command line cheers Bruce On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: External Email - Use Caution Thanks for the answer Bruce. Is For segmentations. I have run freesurfer for 100 nomal patients. I have calculated st

Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Emanuel Alvaredo
External Email - Use Caution Thanks for the answer Bruce. Is For segmentations. I have run freesurfer for 100 nomal patients. I have calculated standard desviation and mean, then I am comparing the results against a patological patient. So, I would like to open freeview, for examp

Re: [Freesurfer] Custom Colormap

2019-04-01 Thread Bruce Fischl
Hi Emanuel can you tell us more. For parellations or segmentations? Are you just changing the color of existing parcels/segments? If so you can just import it in freeview cheers Bruce On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: External Email - Use Caution Hello! I would l