> On 28 Sep 2015, at 13:14, Bruce Fischl wrote:
>
> I see. You can use mri_tesselate and mri_cc for this, probably followed by
> some slight smoothing with mris_smooth, but it's not something we do
> routinely. Emily (ccd) has done some work on vessel segmentation
> specifically and might be
Try using the mri_binarize below with the --surf option. You'll probably
want to add a little smoothing with --surf-smooth 2 or so
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_binarize
On 9/27/15 4:58 AM, Martin Tisdall wrote:
> Could you talk me through the best way to co
I see. You can use mri_tesselate and mri_cc for this, probably followed by
some slight smoothing with mris_smooth, but it's not something we do
routinely. Emily (ccd) has done some work on vessel segmentation
specifically and might be able to help with that.
cheers
Bruce
On Mon, 28 Sep 2015,
I have already performed recon-all but would like to derive a surface model of
a particular segmented brain structure.
I have a wmparc volume file and would like to use a command to get a surface of
a structure by its label.
Slightly differently would also like to know the best way of producin
Hi Martin
what do you mean by "convert"? What is the volume? If it's a T1-weighted
MRI then you can use recon-all, but it's not so much a conversion as a
reconstruction.
cheers
Bruce
On Sun, 27 Sep 2015, Martin Tisdall wrote:
> Could you talk me through the best way to convert a volume to a su
