Do you know why it has multiple frames? What kind of image is it?
On Apr 3, 2013, at 10:51 PM, "Cherise R. Chin Fatt"
wrote:
> Hello Bruce:
>
> I am using a T1-weighted image.
>
>
>
>
> On Wed, Apr 3, 2013 at 9:44 PM, Bruce Fischl
> wrote:
> Ae you trying to put a diffusion scan throug
Ae you trying to put a diffusion scan through recon-all? That won't work, it
needs to be T1 weighted
Bruce
On Apr 3, 2013, at 10:23 PM, "Cherise R. Chin Fatt"
wrote:
> Hello:
>
> I have been trying to use FreeSurfer on an aging population and running into
> difficulties with Talairach Regi
Hi Cherise, the multiple frame error hints to some issue with the data.
It means that it has multiple images, like an fMRI volume (which will
not work), but it could be multiecho mprage (which would be ok after
computing RMS). What are you using as input?
doug
On 4/3/13 10:23 PM, Cherise R.
to upload files, go here:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
you can copy me in the email as well.
On Wed, 2008-07-16 at 20:19 -0500, Vina Goghari wrote:
> Yes, that would be great if you guys could take a look. What's the
> process to upload?
>
> Thanks,
> Vina
>
>
Yes, that would be great if you guys could take a look. What's the
process to upload?
Thanks,
Vina
Bruce Fischl wrote:
do you want to upload one of them for us to look at?
On Wed, 16 Jul 2008, Vina Goghari wrote:
I would say it's pretty typical. I tried a random set of 4 subjects
of the ~70
do you want to upload one of them for us to look at?
On Wed, 16 Jul 2008,
Vina Goghari wrote:
I would say it's pretty typical. I tried a random set of 4 subjects of the
~70 and I get the same error and similar mis-alignment between talairach and
original.
Any thoughts?
Thanks,
Vina
Doug G
I would say it's pretty typical. I tried a random set of 4 subjects of
the ~70 and I get the same error and similar mis-alignment between
talairach and original.
Any thoughts?
Thanks,
Vina
Doug Greve wrote:
That would just do the conversion, it won't fix the problem. Does this
happen with
That would just do the conversion, it won't fix the problem. Does this
happen with all your subjects? How is the quality of your T1s (the one
you sent looks a little funny).
doug
Allison Stevens wrote:
I know someone that uses something like what is below to avoid using
tkregister:
mri
I know someone that uses something like what is below to avoid using
tkregister:
mri_convert $subject/mri/T1.mgz $subject/mri/T1.mnc
mritotal -protocol icbm $subject/mri/T1.mnc $subject/mri/T1.xfm
mv $subject/mri/transforms/talairach.xfm
$subject/mri/transforms/oldtalairach.xfm
cp $subject/mri/T
Thanks Nick. I was wondering whether since this is a problem for all my
subjects (n=70) is there anything else that could fix the problem (i.e.
setting some parameter differently etc), so I wouldn't have to do it
manually for every subject?
Nick Schmansky wrote:
Vina,
See this page:
https://
Vina,
See this page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach
(you won't need the tutorial data, just use your subject)
Nick
On Sat, 2008-07-12 at 11:05 -0500, Vina Goghari wrote:
> Hi all,
> I get this error:
>
> Sat Jul 12 10:24:08 CDT 2008
> talairach_avi done
> #
11 matches
Mail list logo
