Re: [Freesurfer] BOLD time series registration to orig.mgz

2011-10-05 Thread Douglas Greve
Hi Tessa, you can use mri_vol2vol passing it the 4D time series volume and the BBR registration matrix and --fstarg. You will have to motion correct the time series (using the template from BBR as the target). doug On 10/5/11 6:02 AM, Tessa Dekker wrote: Hi, I have used bbregister to register

Re: [Freesurfer] BOLD time series registration to orig.mgz

2011-10-05 Thread Tessa Dekker
Hi, I have used bbregister to register a set of partial volume fMRI time series to the subject structural (orig.mgz), which worked very well. I now want to align each volume in each given time series to the orig.mgz. However, I've only managed to get one resampled volume, the target volume, out o