Re: [Freesurfer] Annotation question in freesurfer

2018-08-02 Thread Bruce Fischl
.pos.sig.culster.summary, we got this cluster info. MNIX -8.8,  MNIY -89.2,  MNIZ 21.4 What are these coordinates? are they in MNI space?  Cheers, Jahanvi   Date: Thu, 2 Aug 2018 10:23:02 -0400 (EDT) From: Bruce Fischl Subject: Re: [Freesurfer] Annotation question in freesurfer To: Freesurfer

Re: [Freesurfer] Annotation question in freesurfer

2018-08-02 Thread jahanvi patel
MNI space? Cheers, Jahanvi > Date: Thu, 2 Aug 2018 10:23:02 -0400 (EDT) > From: Bruce Fischl > Subject: Re: [Freesurfer] Annotation question in freesurfer > To: Freesurfer support list > Message-ID: > > Content-Type: text/plain; charset="utf-8" > Hi

Re: [Freesurfer] Annotation question in freesurfer

2018-08-02 Thread Bruce Fischl
Hi Jahanvi did you mean to attach a figure? If you did it did not make it. Definitely look at the annotation on the surface (inflated probably) if you want to judge its accuracy cheers Bruce On Thu, 2 Aug 2018, jahanvi patel wrote: External Email - Use Caution Dear List,

Re: [Freesurfer] Annotation question

2012-03-08 Thread Douglas N Greve
I think so, although I don't know how Don's program actually works. doug Antonella Kis wrote: > > Thanks Doug. > > You mean by subject to define the subject in the fs_tal2surf which by > default is 'subj': FreeSurfer subject > % {default = 'fsaverage'} to be subj = cvs_avg35? > > Thanks. >

Re: [Freesurfer] Annotation question

2012-03-08 Thread Antonella Kis
Thanks Doug. You mean by subject to define the subject in the fs_tal2surf which by default is  'subj': FreeSurfer subject % {default = 'fsaverage'} to be  subj = cvs_avg35? Thanks. Antonella From: Douglas N Greve To: Antonella Kis ; freesurfer Sent:

Re: [Freesurfer] Annotation question

2012-03-08 Thread Douglas N Greve
Hi Antonella, use cvs_avg35 as the subject and ?h.aparc.annot for the annotation. Antonella Kis wrote: > Hi Doug, > > Sorry I bother again I just want to ask you an advice. I was running > the code which was sent to me by Don: > > vals = fs_tal2surf([-16.92 -29.55 34.44]); > ind_lh = find(vals{1